package mpi

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  1. Error log

mpi 1.03

Error log

The package failed to build. The error log from opam follows.

Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y
The following actions will be performed:
  - recompile opam-depext 1.2.3

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved opam-depext.1.2.3  (cached)
-> removed   opam-depext.1.2.3
-> installed opam-depext.1.2.3
Done.

<><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><>
=> opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead
# Run eval $(opam env) to update the current shell environment

<><> Carrying on to "opam depext -viy mpi.1.03 ocamlfind.1.9.6 host-arch-x86_64.1 conf-pkg-config.3 conf-mpi.1" 

Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies.
# Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian
# The following system packages are needed:
mpi-default-dev
pkg-config
[NOTE] Package host-arch-x86_64 is already installed (current version is 1).
[NOTE] Package ocamlfind is already installed (current version is 1.9.6).
The following actions will be performed:
  - install conf-pkg-config 3
  - install conf-mpi        1
  - install mpi             1.03
===== 3 to install =====

The following system packages will first need to be installed:
    mpi-default-dev pkg-config

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "mpi-default-dev" "pkg-config"
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- Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ...
- Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ...
- Setting up libpsm2-2 (11.2.185-2) ...
- Setting up openmpi-common (4.1.4-3) ...
- Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ...
- update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
- Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
- Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ...
- Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ...
- Setting up automake (1:1.16.5-1.3) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ...
- Setting up libtool (2.4.7-7~deb12u1) ...
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- Setting up libgfortran-12-dev:amd64 (12.2.0-14) ...
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- Setting up gfortran-12 (12.2.0-14) ...
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- Setting up gfortran (4:12.2.0-3) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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- Setting up libfabric1:amd64 (1.17.0-3) ...
- Setting up libopenmpi3:amd64 (4.1.4-3+b1) ...
- Setting up libcaf-openmpi-3:amd64 (2.10.1-1+b1) ...
- Setting up openmpi-bin (4.1.4-3+b1) ...
- update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
- update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
- Setting up libcoarrays-openmpi-dev:amd64 (2.10.1-1+b1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/open-coarrays/openmpi/bin/caf to provide /usr/bin/caf.openmpi (caf-openmpi) in auto mode
- update-alternatives: using /usr/bin/caf.openmpi to provide /usr/bin/caf (caf) in auto mode
- Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
- Setting up mpi-default-dev (1.14) ...
- Processing triggers for libc-bin (2.36-9+deb12u8) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-mpi.1  (cached)
Processing  3/9:
Processing  4/9: [conf-pkg-config: pkg-config]
-> retrieved mpi.1.03  (cached)
+ /usr/bin/pkg-config "--help" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-pkg-config.3)
- usage: pkgconf [OPTIONS] [LIBRARIES]
- 
- basic options:
- 
-   --help                            this message
-   --about                           print pkgconf version and license to stdout
-   --version                         print supported pkg-config version to stdout
-   --atleast-pkgconfig-version       check whether or not pkgconf is compatible
-                                     with a specified pkg-config version
-   --errors-to-stdout                print all errors on stdout instead of stderr
-   --print-errors                    ensure all errors are printed
-   --short-errors                    be less verbose about some errors
-   --silence-errors                  explicitly be silent about errors
-   --list-all                        list all known packages
-   --list-package-names              list all known package names
-   --simulate                        simulate walking the calculated dependency graph
-   --no-cache                        do not cache already seen packages when
-                                     walking the dependency graph
-   --log-file=filename               write an audit log to a specified file
-   --with-path=path                  adds a directory to the search path
-   --define-prefix                   override the prefix variable with one that is guessed based on
-                                     the location of the .pc file
-   --dont-define-prefix              do not override the prefix variable under any circumstances
-   --prefix-variable=varname         sets the name of the variable that pkgconf considers
-                                     to be the package prefix
-   --relocate=path                   relocates a path and exits (mostly for testsuite)
-   --dont-relocate-paths             disables path relocation support
- 
- cross-compilation personality support:
- 
-   --personality=triplet|filename    sets the personality to 'triplet' or a file named 'filename'
-   --dump-personality                dumps details concerning selected personality
- 
- checking specific pkg-config database entries:
- 
-   --atleast-version                 require a specific version of a module
-   --exact-version                   require an exact version of a module
-   --max-version                     require a maximum version of a module
-   --exists                          check whether or not a module exists
-   --uninstalled                     check whether or not an uninstalled module will be used
-   --no-uninstalled                  never use uninstalled modules when satisfying dependencies
-   --no-provides                     do not use 'provides' rules to resolve dependencies
-   --maximum-traverse-depth          maximum allowed depth for dependency graph
-   --static                          be more aggressive when computing dependency graph
-                                     (for static linking)
-   --shared                          use a simplified dependency graph (usually default)
-   --pure                            optimize a static dependency graph as if it were a normal
-                                     dependency graph
-   --env-only                        look only for package entries in PKG_CONFIG_PATH
-   --ignore-conflicts                ignore 'conflicts' rules in modules
-   --validate                        validate specific .pc files for correctness
- 
- querying specific pkg-config database fields:
- 
-   --define-variable=varname=value   define variable 'varname' as 'value'
-   --variable=varname                print specified variable entry to stdout
-   --cflags                          print required CFLAGS to stdout
-   --cflags-only-I                   print required include-dir CFLAGS to stdout
-   --cflags-only-other               print required non-include-dir CFLAGS to stdout
-   --libs                            print required linker flags to stdout
-   --libs-only-L                     print required LDPATH linker flags to stdout
-   --libs-only-l                     print required LIBNAME linker flags to stdout
-   --libs-only-other                 print required other linker flags to stdout
-   --print-requires                  print required dependency frameworks to stdout
-   --print-requires-private          print required dependency frameworks for static
-                                     linking to stdout
-   --print-provides                  print provided dependencies to stdout
-   --print-variables                 print all known variables in module to stdout
-   --digraph                         print entire dependency graph in graphviz 'dot' format
-   --keep-system-cflags              keep -I/usr/include entries in cflags output
-   --keep-system-libs                keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output
-   --path                            show the exact filenames for any matching .pc files
-   --modversion                      print the specified module's version to stdout
-   --internal-cflags                 do not filter 'internal' cflags from output
- 
- filtering output:
- 
-   --msvc-syntax                     print translatable fragments in MSVC syntax
-   --fragment-filter=types           filter output fragments to the specified types
- 
- report bugs to <https://github.com/pkgconf/pkgconf/issues/new>.
-> compiled  conf-pkg-config.3
-> installed conf-pkg-config.3
Processing  6/9: [conf-mpi: sh configure]
+ /usr/bin/sh "configure" "linux" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-mpi.1)
-> compiled  conf-mpi.1
-> installed conf-mpi.1
[mpi: patch] applying post103.patch
Processing  8/9: [mpi: patch]
Processing  8/9: [mpi: make all]
+ /usr/bin/make "all" "opt" "MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include" "MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib" "MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc" "MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun" (CWD=/home/opam/.opam/5.1/.opam-switch/build/mpi.1.03)
- cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall   -c -o init.o init.c
- init.c: In function 'caml_mpi_error_handler':
- init.c:37:9: warning: implicit declaration of function 'copy_string'; did you mean 'caml_copy_string'? [-Wimplicit-function-declaration]
-    37 |   msg = copy_string(errmsg);
-       |         ^~~~~~~~~~~
-       |         caml_copy_string
- init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
-    39 |     caml_mpi_exn = caml_named_value("Mpi.Error");
-       |                  ^
- init.c:41:7: warning: implicit declaration of function 'invalid_argument'; did you mean 'caml_invalid_argument'? [-Wimplicit-function-declaration]
-    41 |       invalid_argument("Exception MPI.Error not initialized");
-       |       ^~~~~~~~~~~~~~~~
-       |       caml_invalid_argument
- init.c:43:3: warning: implicit declaration of function 'raise_with_arg'; did you mean 'caml_raise_with_arg'? [-Wimplicit-function-declaration]
-    43 |   raise_with_arg(*caml_mpi_exn, msg);
-       |   ^~~~~~~~~~~~~~
-       |   caml_raise_with_arg
- init.c: In function 'caml_mpi_init':
- init.c:55:10: warning: implicit declaration of function 'stat_alloc' [-Wimplicit-function-declaration]
-    55 |   argv = stat_alloc((argc + 1) * sizeof(char *));
-       |          ^~~~~~~~~~
- init.c:55:8: warning: assignment to 'char **' from 'int' makes pointer from integer without a cast [-Wint-conversion]
-    55 |   argv = stat_alloc((argc + 1) * sizeof(char *));
-       |        ^
- init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
-    56 |   for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
-       |                                      ^
- init.c:62:12: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
-    62 |           (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
-       |            ^~~~~~~~~~~~~~~~~~~~
-       |            MPI_User_function
- init.c:62:12: note: each undeclared identifier is reported only once for each function it appears in
- init.c:62:34: error: expected expression before ')' token
-    62 |           (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
-       |                                  ^
- init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
-    61 |   MPI_Comm_create_errhandler(
-       |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
- In file included from init.c:18:
- /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
-  1377 | OMPI_DECLSPEC  int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
-       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
- init.c: In function 'caml_mpi_wtime':
- init.c:79:10: warning: implicit declaration of function 'copy_double'; did you mean 'caml_copy_double'? [-Wimplicit-function-declaration]
-    79 |   return copy_double(MPI_Wtime());
-       |          ^~~~~~~~~~~
-       |          caml_copy_double
- init.c: At top level:
- init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
-    30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
-       |             ^~~~~~~~~~~~~~~~~~~~~~
- make: *** [<builtin>: init.o] Error 1
[ERROR] The compilation of mpi.1.03 failed at "make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun".

#=== ERROR while compiling mpi.1.03 ===========================================#
# context              2.1.6 | linux/x86_64 | ocaml-base-compiler.5.1.1 | file:///src
# path                 ~/.opam/5.1/.opam-switch/build/mpi.1.03
# command              /usr/bin/make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun
# exit-code            2
# env-file             ~/.opam/log/mpi-115-29e289.env
# output-file          ~/.opam/log/mpi-115-29e289.out
### output ###
# cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall   -c -o init.o init.c
# init.c: In function 'caml_mpi_error_handler':
# init.c:37:9: warning: implicit declaration of function 'copy_string'; did you mean 'caml_copy_string'? [-Wimplicit-function-declaration]
#    37 |   msg = copy_string(errmsg);
#       |         ^~~~~~~~~~~
#       |         caml_copy_string
# init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
#    39 |     caml_mpi_exn = caml_named_value("Mpi.Error");
#       |                  ^
# init.c:41:7: warning: implicit declaration of function 'invalid_argument'; did you mean 'caml_invalid_argument'? [-Wimplicit-function-declaration]
#    41 |       invalid_argument("Exception MPI.Error not initialized");
#       |       ^~~~~~~~~~~~~~~~
#       |       caml_invalid_argument
# init.c:43:3: warning: implicit declaration of function 'raise_with_arg'; did you mean 'caml_raise_with_arg'? [-Wimplicit-function-declaration]
#    43 |   raise_with_arg(*caml_mpi_exn, msg);
#       |   ^~~~~~~~~~~~~~
#       |   caml_raise_with_arg
# init.c: In function 'caml_mpi_init':
# init.c:55:10: warning: implicit declaration of function 'stat_alloc' [-Wimplicit-function-declaration]
#    55 |   argv = stat_alloc((argc + 1) * sizeof(char *));
#       |          ^~~~~~~~~~
# init.c:55:8: warning: assignment to 'char **' from 'int' makes pointer from integer without a cast [-Wint-conversion]
#    55 |   argv = stat_alloc((argc + 1) * sizeof(char *));
#       |        ^
# init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
#    56 |   for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
#       |                                      ^
# init.c:62:12: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
#    62 |           (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
#       |            ^~~~~~~~~~~~~~~~~~~~
#       |            MPI_User_function
# init.c:62:12: note: each undeclared identifier is reported only once for each function it appears in
# init.c:62:34: error: expected expression before ')' token
#    62 |           (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
#       |                                  ^
# init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
#    61 |   MPI_Comm_create_errhandler(
#       |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
# In file included from init.c:18:
# /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
#  1377 | OMPI_DECLSPEC  int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
#       |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
# init.c: In function 'caml_mpi_wtime':
# init.c:79:10: warning: implicit declaration of function 'copy_double'; did you mean 'caml_copy_double'? [-Wimplicit-function-declaration]
#    79 |   return copy_double(MPI_Wtime());
#       |          ^~~~~~~~~~~
#       |          caml_copy_double
# init.c: At top level:
# init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
#    30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
#       |             ^~~~~~~~~~~~~~~~~~~~~~
# make: *** [<builtin>: init.o] Error 1



<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build mpi 1.03
+- 
+- The following changes have been performed
| - install conf-mpi        1
| - install conf-pkg-config 3
+- 
# Run eval $(opam env) to update the current shell environment

The former state can be restored with:
    /usr/bin/opam switch import "/home/opam/.opam/5.1/.opam-switch/backup/state-20240912093819.export"
'opam --cli=2.1 install mpi.1.03 ocamlfind.1.9.6 host-arch-x86_64.1 conf-pkg-config.3 conf-mpi.1 --verbose --yes --confirm-level=unsafe-yes' failed.
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